Naka lab

CiRA, Kyoto Univ.

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Publications List

2014

  • Nao Hirata, Masato Nakagawa, Yuto Fujibayashi, Kaori Yamauchi, Asako Murata, Itsunari Minami, Maiko Tomioka, Takayuki Kondo, Ting-Fang Kuo, Hiroshi Endo, Haruhisa Inoue3, Shin-ichi Sato1,2, Shin Ando1,2, Yoshinori Kawazoe, Kazuhiro Aiba, Koh Nagata, Eihachiro Kawase, Young-Tae Chang6,, Hirofumi Suemori, Koji Eto, Hiromitsu Nakauchi, Shinya Yamanaka, Norio Nakatsuji, Kazumitsu Ueda, and Motonari Uesugi
    A Chemical Probe that Labels Human Pluripotent Stem Cells.
    Cell Reports | Published Online 7 March 2014  doi: 10.1016/j.celrep.2014.02.006
  • Daisuke Doi, Bumpei Samata, Mitsuko Katsukawa, Tetsuhiro Kikuchi, Asuka Morizane, Yuichi Ono, Kiyotoshi Sekiguchi, Masato Nakagawa, Malin Parmar, and Jun Takahashi
    Isolation of Human Induced Pluripotent Stem Cell-Derived Dopaminergic Progenitors by Cell Sorting for Successful Transplantation.
    Stem Cell Reports 2014 March 06 doi: 10.1016/j.stemcr.2014.01.013
  • Nakagawa M, Taniguchi Y, Senda S, Takizawa N, Ichisaka T, Asano K, Morizane A, Doi D, Takahashi J, Nishizawa M, Yoshida Y, Toyoda T, Osafune K, Sekiguchi K, YamanakaS.
    A novel efficient feeder-free culture system for the derivation of human induced pluripotent stem cells.
    Scientific Reports 2014 Jan 8;4:3594. doi: 10.1038/srep03594

2013~

  • Yamana R, Iwasaki M, Wakabayashi M, Nakagawa M, Yamanaka S. & Ishihama Y.
    Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot NanoLC-MS/MS analysis with meter-scale monolithic silica columns.
    Journal of proteome research 2013 Jan 4;12(1):214-21. doi: 10.1021/pr300837u. Epub 2012 Dec 4.
  • Wang YC, Nakagawa M, Garitaonandia I, Slavin I, Altun G, Lacharite RM, Nazor KL, Tran HT, Lynch CL, Leonardo TR, Liu Y, Peterson SE, Laurent LC, Yamanaka S, & Loring JF
    Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis.
    Cell Res. 2011
  • Nakamura T, Nakagawa M, Ichisaka T, Shiota A, & Yamanaka S
    Essential roles of ECAT15-2/Dppa2 in functional lung development.
    Mol Cell Biol. 2011
  • Hirano K, Nagata S, Yamaguchi S, Nakagawa M, Okita K, Kotera H, Ainscough J, & Tada T
    Human and Mouse Induced Pluripotent Stem Cells Are Differentially Reprogrammed in response to Kinase Inhibitors.
    Stem Cells Dev. 2011
  • Okita K, Matsumura Y, Sato Y, Okada A, Morizane A, Okamoto S, Hong H, Nakagawa M, Tanabe K, Tezuka KI, Shibata T, Kunisada T, Takahashi M, Takahashi J, Saji H, Yamanaka S.
    A more efficient method to generate integration-free human iPS cells.
    Nat Methods. 2011
  • Fujiwara M, Yan P, Otsuji TG, Narazaki G, Uosaki H, Fukushima H, Kuwahara K, Harada M, Matsuda H, Matsuoka S, Okita K, Takahashi K, Nakagawa M, Ikeda T, Sakata R, Mummery CL, Nakatsuji N, Yamanaka S, Nakao K, Yamashita JK
    Induction and enhancement of cardiac cell differentiation from mouse and human induced pluripotent stem cells with cyclosporin-A.
    PLoS One. 2011
  • Nakagawa M, Takizawa N, Narita M, Ichisaka T, Yamanaka S.
    Promotion of direct reprogramming by transformation-deficient Myc.
    Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14152-7. Epub 2010 Jul 26.
  • Nakagawa M, Yamanaka S
    Reprogramming of somatic cells to pluripotency.
    Adv Exp Med Biol. 2010;695:215-24.
  • Saunders, L.R, Sharma, A.D, Tawney, J, Nakagawa, M, Okita, K, Yamanaka, S, Willenbring, H, and Verdin, E
    miRNAs regulate SIRT1 expression during mouse embryonic stem cell differentiation and in adult mouse tissues.
    Aging (Albany NY). 2010 Jul;2(7):415-31.
  • Kazuki, Y, Hiratsuka, M, Takiguchi, M, Osaki, M, Kajitani, N, Hoshiya, H, Hiramatsu, K, Yoshino, T, Kazuki, K, Ishihara, C, Takehara, S, Higaki, K, Nakagawa, M, Takahashi, K, Yamanaka, S, and Oshimura, M
    Complete genetic correction of ips cells from Duchenne muscular dystrophy.
    Mol Ther 18, 386-393.

2009

  • Nagata S, Toyoda M, Yamaguchi S, Hirano K, Makino H, Nishino K, Miyagawa Y, Okita H, Kiyokawa N, Nakagawa M, Yamanaka S, Akutsu H, Umezawa A, Tada T
    Efficient reprogramming of human and mouse primary extra-embryonic cells to pluripotent stem cellsGenes Cells. 2009 Dec;14(12):1395-404. Epub 2009 Nov 13.
  • Hong H, Takahashi K, Ichisaka T, Aoi T, Kanagawa O, Nakagawa M, Okita K, Yamanaka S
    Suppression of induced pluripotent stem cell generation by the p53-p21 pathway
    Nature. 2009 Aug 27;460(7259):1132-5. Epub 2009 Aug 9.
  • Miura K, Okada Y, Aoi T, Okada A, Takahashi K, Okita K, Nakagawa M, Koyanagi M, Tanabe K, Ohnuki M, Ogawa D, Ikeda E, Okano H, Yamanaka S
    Variation in the safety of induced pluripotent stem cell lines.
    Nat Biotechnol. 2009 Aug;27(8):743-5. Epub 2009 Jul 9.
  • Niwa A, Umeda K, Chang H, Saito M, Okita K, Takahashi K, Nakagawa M, Yamanaka S, Nakahata T, Heike T
    Orderly hematopoietic development of induced pluripotent stem cells via Flk-1(+) hemoangiogenic progenitors.
    J Cell Physiol. 2009 Nov;221(2):367-77.
  • Tsubooka N, Ichisaka T, Okita K, Takahashi K, Nakagawa M, Yamanaka S
    Roles of Sall4 in the generation of pluripotent stem cells from blastocysts and fibroblasts.
    Genes Cells. 2009 Jun;14(6):683-94. Epub 2009 May 19.

2008

  • Nakagawa M, Koyanagi M, Tanabe K, Takahashi K, Ichisaka T, Aoi T, Okita K, Mochiduki Y, Takizawa N, Yamanaka S
    Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.
    Nat Biotechnol. 2008 Jan;26(1):101-6. Epub 2007 Nov 30.
  • Okita K, Nakagawa M, Hyenjong H, Ichisaka T, Yamanaka S
    Generation of mouse induced pluripotent stem cells without viral vectors.
    Science
    . 2008 Nov 7;322(5903):949-53. Epub 2008 Oct 9.
  • Aoi T, Yae K, Nakagawa M, Ichisaka T, Okita K, Takahashi K, Chiba T, Yamanaka S
    Generation of pluripotent stem cells from adult mouse liver and stomach cells.
    Science. 2008 Aug 1;321(5889):699-702. Epub 2008 Feb 14. Erratum in: Science.2008 Aug 1;321(5889): 641.

2007

  • Takahashi K, Okita K, Nakagawa M, Yamanaka S
    Induction of pluripotent stem cells from fibroblast cultures.
    Nat Protoc. 2007;2(12):3081-9.

~2006

  • Imamura M, Miura K, Iwabuchi K, Ichisaka T, Nakagawa M, Lee J, Kanatsu-Shinohara M, Shinohara T, Yamanaka S
    Transcriptional repression and DNA hypermethylation of a small set of ES cell marker genes in male germline stem cells.
    BMC Dev Biol. 2006 Jul 21;6:34.
  • Amano H, Itakura K, Maruyama M, Ichisaka T, Nakagawa M, Yamanaka S
    Identification and targeted disruption of the mouse gene encoding ESG1 (PH34/ECAT2/DPPA5).
    BMC Dev Biol. 2006 Feb 28;6:11.
  • Takahashi K, Nakagawa M, Young SG, Yamanaka S
    Differential membrane localization of ERas and Rheb, two Ras-related proteins involved in the phosphatidylinositol 3-kinase/mTOR pathway.
    J Biol Chem. 2005 Sep 23;280(38):32768-74. Epub 2005 Jul 26.
  • Nakagawa M, Yamanaka S
    Mechanism for maintaining pluripotency in embryonic stem cells and inner cell mass
    Tanpakushitsu Kakusan Koso. 2005 May;50(6 Suppl):546-50. Review. Japanese.
  • Maruyama M, Ichisaka T, Nakagawa M, Yamanaka S
    Differential roles for Sox15 and Sox2 in transcriptional control in mouse embryonic stem cells.
    J Biol Chem. 2005 Jul 1;280(26):24371-9. Epub 2005 Apr 29.